IL_1VWW_037

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGAAAGA*UCUAGUAGCUG

Length

19 nucleotides

Bulged bases

1VWW|1|5|A|1650, 1VWW|1|5|G|1654, 1VWW|1|5|C|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67828.1

Basepair signature

cWW-R-cWW

Number of instances in this motif group

61

Unit IDs

1VWW|1|5|C|1520
1VWW|1|5|C|1521
1VWW|1|5|G|1522
1VWW|1|5|A|1523
1VWW|1|5|A|1524
1VWW|1|5|A|1525
1VWW|1|5|G|1526
1VWW|1|5|A|1527
*
1VWW|1|5|U|1647
1VWW|1|5|C|1648
1VWW|1|5|U|1649
1VWW|1|5|A|1650
1VWW|1|5|G|1651
1VWW|1|5|U|1652
1VWW|1|5|A|1653
1VWW|1|5|G|1654
1VWW|1|5|C|1655
1VWW|1|5|U|1656
1VWW|1|5|G|1657

Current chains

Chain 5

28S ribosomal RNA

Nearby chains