IL_1VWW_043

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAGCGAAUG*CAAACUUU

Length

17 nucleotides

Bulged bases

1VWW|1|5|G|1741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44540.7

Basepair signature

cWW-cSH-tHS-cWW

Number of instances in this motif group

62

Unit IDs

1VWW|1|5|A|1737
1VWW|1|5|A|1738
1VWW|1|5|G|1739
1VWW|1|5|C|1740
1VWW|1|5|G|1741
1VWW|1|5|A|1742
1VWW|1|5|A|1743
1VWW|1|5|U|1744
1VWW|1|5|G|1745
*
1VWW|1|5|C|1785
1VWW|1|5|A|1786
1VWW|1|5|A|1787
1VWW|1|5|A|1788
1VWW|1|5|C|1789
1VWW|1|5|U|1790
1VWW|1|5|U|1791
1VWW|1|5|U|1792

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA