IL_1VWW_047

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGCCCGAUGCCG*CGGGC

Length

18 nucleotides

Bulged bases

1VWW|1|5|G|1919, 1VWW|1|5|C|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|1910
1VWW|1|5|C|1911
1VWW|1|5|G|1912
1VWW|1|5|C|1913
1VWW|1|5|C|1914
1VWW|1|5|C|1915
1VWW|1|5|G|1916
1VWW|1|5|A|1917
1VWW|1|5|U|1918
1VWW|1|5|G|1919
1VWW|1|5|C|1920
1VWW|1|5|C|1921
1VWW|1|5|G|1922
*
1VWW|1|5|C|2062
1VWW|1|5|G|2063
1VWW|1|5|G|2064
1VWW|1|5|G|2065
1VWW|1|5|C|2066

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA