IL_1VWW_052

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGG*CAC

Length

36 nucleotides

Bulged bases

1VWW|1|5|A|1983, 1VWW|1|5|A|1991, 1VWW|1|5|U|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|1969
1VWW|1|5|A|1970
1VWW|1|5|C|1971
1VWW|1|5|G|1972
1VWW|1|5|G|1973
1VWW|1|5|U|1974
1VWW|1|5|G|1975
1VWW|1|5|G|1976
1VWW|1|5|C|1977
1VWW|1|5|C|1978
1VWW|1|5|A|1979
1VWW|1|5|U|1980
1VWW|1|5|G|1981
1VWW|1|5|G|1982
1VWW|1|5|A|1983
1VWW|1|5|A|1984
1VWW|1|5|G|1985
1VWW|1|5|U|1986
1VWW|1|5|C|1987
1VWW|1|5|G|1988
1VWW|1|5|G|1989
1VWW|1|5|A|1990
1VWW|1|5|A|1991
1VWW|1|5|U|1992
1VWW|1|5|C|1993
1VWW|1|5|C|1994
1VWW|1|5|G|1995
1VWW|1|5|C|1996
1VWW|1|5|U|1997
1VWW|1|5|A|1998
1VWW|1|5|A|1999
1VWW|1|5|G|2000
1VWW|1|5|G|2001
*
1VWW|1|5|C|2016
1VWW|1|5|A|2017
1VWW|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains