IL_1VWW_055

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCG*CCCCCGGAGCCCCGCGGACGCUACG

Length

67 nucleotides

Bulged bases

1VWW|1|5|U|2090, 1VWW|1|5|A|2093, 1VWW|1|5|G|2111, 1VWW|1|5|G|2114, 1VWW|1|5|G|2115, 1VWW|1|5|C|2116, 1VWW|1|5|C|2119, 1VWW|1|5|G|2122, 1VWW|1|5|C|2123, 1VWW|1|5|G|2124, 1VWW|1|5|C|2248, 1VWW|1|5|C|2249, 1VWW|1|5|C|2256, 1VWW|1|5|G|2259, 1VWW|1|5|C|2260, 1VWW|1|5|U|2267, 1VWW|1|5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_13959.7

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

40

Unit IDs

1VWW|1|5|C|2087
1VWW|1|5|A|2088
1VWW|1|5|G|2089
1VWW|1|5|U|2090
1VWW|1|5|C|2091
1VWW|1|5|G|2092
1VWW|1|5|A|2093
1VWW|1|5|G|2094
1VWW|1|5|A|2095
1VWW|1|5|G|2096
1VWW|1|5|U|2097
1VWW|1|5|G|2098
1VWW|1|5|G|2099
1VWW|1|5|A|2100
1VWW|1|5|C|2101
1VWW|1|5|G|2102
1VWW|1|5|G|2103
1VWW|1|5|G|2104
1VWW|1|5|A|2105
1VWW|1|5|G|2106
1VWW|1|5|C|2107
1VWW|1|5|G|2108
1VWW|1|5|G|2109
1VWW|1|5|C|2110
1VWW|1|5|G|2111
1VWW|1|5|G|2112
1VWW|1|5|G|2113
1VWW|1|5|G|2114
1VWW|1|5|G|2115
1VWW|1|5|C|2116
1VWW|1|5|G|2117
1VWW|1|5|G|2118
1VWW|1|5|C|2119
1VWW|1|5|G|2120
1VWW|1|5|C|2121
1VWW|1|5|G|2122
1VWW|1|5|C|2123
1VWW|1|5|G|2124
1VWW|1|5|C|2125
1VWW|1|5|G|2126
1VWW|1|5|C|2127
1VWW|1|5|G|2128
*
1VWW|1|5|C|2246
1VWW|1|5|C|2247
1VWW|1|5|C|2248
1VWW|1|5|C|2249
1VWW|1|5|C|2250
1VWW|1|5|G|2251
1VWW|1|5|G|2252
1VWW|1|5|A|2253
1VWW|1|5|G|2254
1VWW|1|5|C|2255
1VWW|1|5|C|2256
1VWW|1|5|C|2257
1VWW|1|5|C|2258
1VWW|1|5|G|2259
1VWW|1|5|C|2260
1VWW|1|5|G|2261
1VWW|1|5|G|2262
1VWW|1|5|A|2263
1VWW|1|5|C|2264
1VWW|1|5|G|2265
1VWW|1|5|C|2266
1VWW|1|5|U|2267
1VWW|1|5|A|2268
1VWW|1|5|C|2269
1VWW|1|5|G|2270

Current chains

Chain 5

28S ribosomal RNA

Nearby chains