IL_1VWW_059

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CCAUAUCCGCAGCAGGUC

Length

22 nucleotides

Bulged bases

1VWW|1|5|U|2788, 1VWW|1|5|U|2790, 1VWW|1|5|C|2794, 1VWW|1|5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81512.1

Basepair signature

cWW-cWW-L-R-R-tHW-L-R-tHH-cWW

Number of instances in this motif group

1

Unit IDs

1VWW|1|5|G|2402
1VWW|1|5|A|2403
1VWW|1|5|A|2404
1VWW|1|5|G|2405
*
1VWW|1|5|C|2785
1VWW|1|5|C|2786
1VWW|1|5|A|2787
1VWW|1|5|U|2788
1VWW|1|5|A|2789
1VWW|1|5|U|2790
1VWW|1|5|C|2791
1VWW|1|5|C|2792
1VWW|1|5|G|2793
1VWW|1|5|C|2794
1VWW|1|5|A|2795
1VWW|1|5|G|2796
1VWW|1|5|C|2797
1VWW|1|5|A|2798
1VWW|1|5|G|2799
1VWW|1|5|G|2800
1VWW|1|5|U|2801
1VWW|1|5|C|2802

Current chains

Chain 5

28S ribosomal RNA

Nearby chains