IL_1VWW_065

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGAAGCCGGCG*CGCUGGCCCUUGAAAAUCC

Length

32 nucleotides

Bulged bases

1VWW|1|5|C|2604, 1VWW|1|5|C|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48256.1

Basepair signature

cWW-cWW

Number of instances in this motif group

360

Unit IDs

1VWW|1|5|G|2596
1VWW|1|5|G|2597
1VWW|1|5|A|2598
1VWW|1|5|G|2599
1VWW|1|5|A|2600
1VWW|1|5|A|2601
1VWW|1|5|G|2602
1VWW|1|5|C|2603
1VWW|1|5|C|2604
1VWW|1|5|G|2605
1VWW|1|5|G|2606
1VWW|1|5|C|2607
1VWW|1|5|G|2608
*
1VWW|1|5|C|2731
1VWW|1|5|G|2732
1VWW|1|5|C|2733
1VWW|1|5|U|2734
1VWW|1|5|G|2735
1VWW|1|5|G|2736
1VWW|1|5|C|2737
1VWW|1|5|C|2738
1VWW|1|5|C|2739
1VWW|1|5|U|2740
1VWW|1|5|U|2741
1VWW|1|5|G|2742
1VWW|1|5|A|2743
1VWW|1|5|A|2744
1VWW|1|5|A|2745
1VWW|1|5|A|2746
1VWW|1|5|U|2747
1VWW|1|5|C|2748
1VWW|1|5|C|2749

Current chains

Chain 5

28S ribosomal RNA

Nearby chains