IL_1VWW_073

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VWW_073 not in the Motif Atlas

Geometric match to IL_4V9F_111

Geometric discrepancy: 0.2134

The information below is about IL_4V9F_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

1VWW|1|5|G|2847
1VWW|1|5|G|2848
1VWW|1|5|A|2849
1VWW|1|5|A|2850
1VWW|1|5|G|2851
1VWW|1|5|U|2852
1VWW|1|5|C|2853
1VWW|1|5|G|2854
1VWW|1|5|G|2855
*
1VWW|1|5|C|3837
1VWW|1|5|U|3838
1VWW|1|5|G|3839
1VWW|1|5|U|3840
1VWW|1|5|C|3841

Current chains

Chain 5

28S ribosomal RNA

Nearby chains