3D structure

PDB id
1VWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
AGUCGG*CUGU
Length
10 nucleotides
Bulged bases
1VWW|1|5|G|3839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_92602.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
309

Unit IDs

1VWW|1|5|A|2850
1VWW|1|5|G|2851
1VWW|1|5|U|2852
1VWW|1|5|C|2853
1VWW|1|5|G|2854
1VWW|1|5|G|2855
*
1VWW|1|5|C|3837
1VWW|1|5|U|3838
1VWW|1|5|G|3839
1VWW|1|5|U|3840

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1799 s
Application loaded.