IL_1VWW_075

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

1VWW|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VWW_075 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1892

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1VWW|1|5|C|2867
1VWW|1|5|G|2868
1VWW|1|5|U|2869
1VWW|1|5|A|2870
1VWW|1|5|A|2871
1VWW|1|5|C|2872
*
1VWW|1|5|G|2877
1VWW|1|5|G|2878
1VWW|1|5|A|2879
1VWW|1|5|U|2880
1VWW|1|5|A|2881
1VWW|1|5|A|2882
1VWW|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains