IL_1VWW_077

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

1VWW|1|5|G|2903, 1VWW|1|5|U|2904, 1VWW|1|5|U|3595, 1VWW|1|5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81965.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

44

Unit IDs

1VWW|1|5|G|2901
1VWW|1|5|G|2902
1VWW|1|5|G|2903
1VWW|1|5|U|2904
1VWW|1|5|C|2905
*
1VWW|1|5|G|3589
1VWW|1|5|G|3590
1VWW|1|5|C|3591
1VWW|1|5|G|3592
1VWW|1|5|C|3593
1VWW|1|5|C|3594
1VWW|1|5|U|3595
1VWW|1|5|A|3596
1VWW|1|5|G|3597
1VWW|1|5|C|3598

Current chains

Chain 5

28S ribosomal RNA

Nearby chains