3D structure

PDB id
1VWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUAGU*GUGGGG
Length
11 nucleotides
Bulged bases
1VWW|1|5|G|4183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_87168.1
Basepair signature
cWW-tSS-L-tSH-tSS-L-cSH-R-R-L-bif-L-cWW
Number of instances in this motif group
1

Unit IDs

1VWW|1|5|C|3926
1VWW|1|5|U|3927
1VWW|1|5|A|3928
1VWW|1|5|G|3929
1VWW|1|5|U|3930
*
1VWW|1|5|G|4180
1VWW|1|5|U|4181
1VWW|1|5|G|4182
1VWW|1|5|G|4183
1VWW|1|5|G|4184
1VWW|1|5|G|4185

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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