3D structure

PDB id
1VWW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAGCUCAG*CGUGGAGCAGAAGGGCAAAAGCUC
Length
32 nucleotides
Bulged bases
1VWW|1|5|A|4280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85707.1
Basepair signature
cWW-L-R-R-R-cWW
Number of instances in this motif group
1

Unit IDs

1VWW|1|5|G|4238
1VWW|1|5|A|4239
1VWW|1|5|G|4240
1VWW|1|5|C|4241
1VWW|1|5|U|4242
1VWW|1|5|C|4243
1VWW|1|5|A|4244
1VWW|1|5|G|4245
*
1VWW|1|5|C|4263
1VWW|1|5|G|4264
1VWW|1|5|U|4265
1VWW|1|5|G|4266
1VWW|1|5|G|4267
1VWW|1|5|A|4268
1VWW|1|5|G|4269
1VWW|1|5|C|4270
1VWW|1|5|A|4271
1VWW|1|5|G|4272
1VWW|1|5|A|4273
1VWW|1|5|A|4274
1VWW|1|5|G|4275
1VWW|1|5|G|4276
1VWW|1|5|G|4277
1VWW|1|5|C|4278
1VWW|1|5|A|4279
1VWW|1|5|A|4280
1VWW|1|5|A|4281
1VWW|1|5|A|4282
1VWW|1|5|G|4283
1VWW|1|5|C|4284
1VWW|1|5|U|4285
1VWW|1|5|C|4286

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA

Coloring options:

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