IL_1VWW_090

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGCUCU*AACGUGAGCUGG

Length

19 nucleotides

Bulged bases

1VWW|1|5|A|4518, 1VWW|1|5|C|4519, 1VWW|1|5|G|4522, 1VWW|1|5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48256.1

Basepair signature

cWW-cWW

Number of instances in this motif group

360

Unit IDs

1VWW|1|5|C|4453
1VWW|1|5|G|4454
1VWW|1|5|G|4455
1VWW|1|5|C|4456
1VWW|1|5|U|4457
1VWW|1|5|C|4458
1VWW|1|5|U|4459
*
1VWW|1|5|A|4517
1VWW|1|5|A|4518
1VWW|1|5|C|4519
1VWW|1|5|G|4520
1VWW|1|5|U|4521
1VWW|1|5|G|4522
1VWW|1|5|A|4523
1VWW|1|5|G|4524
1VWW|1|5|C|4525
1VWW|1|5|U|4526
1VWW|1|5|G|4527
1VWW|1|5|G|4528

Current chains

Chain 5

28S ribosomal RNA

Nearby chains