IL_1VWW_098

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGCUU*AAUGGGGC

Length

14 nucleotides

Bulged bases

1VWW|1|5|A|4656, 1VWW|1|5|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81965.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

44

Unit IDs

1VWW|1|5|G|4637
1VWW|1|5|U|4638
1VWW|1|5|G|4639
1VWW|1|5|C|4640
1VWW|1|5|U|4641
1VWW|1|5|U|4642
*
1VWW|1|5|A|4655
1VWW|1|5|A|4656
1VWW|1|5|U|4657
1VWW|1|5|G|4658
1VWW|1|5|G|4659
1VWW|1|5|G|4660
1VWW|1|5|G|4661
1VWW|1|5|C|4662

Current chains

Chain 5

28S ribosomal RNA

Nearby chains