IL_1VWW_100

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGGAGCCU*GGGAACCU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|4740
1VWW|1|5|C|4741
1VWW|1|5|G|4742
1VWW|1|5|G|4743
1VWW|1|5|A|4744
1VWW|1|5|G|4745
1VWW|1|5|C|4746
1VWW|1|5|C|4747
1VWW|1|5|U|4748
*
1VWW|1|5|G|4952
1VWW|1|5|G|4953
1VWW|1|5|G|4954
1VWW|1|5|A|4955
1VWW|1|5|A|4956
1VWW|1|5|C|4957
1VWW|1|5|C|4958
1VWW|1|5|U|4959

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA