IL_1VWW_101

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCUCGGAUAG*UGCGGAGUGC

Length

21 nucleotides

Bulged bases

1VWW|1|5|C|4756, 1VWW|1|5|C|4757, 1VWW|1|5|U|4763, 1VWW|1|5|C|4871, 1VWW|1|5|G|4872, 1VWW|1|5|A|4874, 1VWW|1|5|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48256.1

Basepair signature

cWW-cWW

Number of instances in this motif group

360

Unit IDs

1VWW|1|5|G|4755
1VWW|1|5|C|4756
1VWW|1|5|C|4757
1VWW|1|5|U|4758
1VWW|1|5|C|4759
1VWW|1|5|G|4760
1VWW|1|5|G|4761
1VWW|1|5|A|4762
1VWW|1|5|U|4763
1VWW|1|5|A|4764
1VWW|1|5|G|4765
*
1VWW|1|5|U|4869
1VWW|1|5|G|4870
1VWW|1|5|C|4871
1VWW|1|5|G|4872
1VWW|1|5|G|4873
1VWW|1|5|A|4874
1VWW|1|5|G|4875
1VWW|1|5|U|4876
1VWW|1|5|G|4877
1VWW|1|5|C|4878

Current chains

Chain 5

28S ribosomal RNA

Nearby chains