IL_1VWW_105

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGGGUUUCGUACGUAGCAGAG*CGAUCUAUUGAAAGUCAGCCCUCG

Length

46 nucleotides

Bulged bases

1VWW|1|5|U|5006, 1VWW|1|5|C|5013, 1VWW|1|5|A|5016, 1VWW|1|5|G|5041, 1VWW|1|5|G|5049, 1VWW|1|5|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51576.1

Basepair signature

cWW-cWW-L-R-R-L-tHS-L-R-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

1VWW|1|5|C|4996
1VWW|1|5|G|4997
1VWW|1|5|G|4998
1VWW|1|5|G|4999
1VWW|1|5|G|5000
1VWW|1|5|U|5001
1VWW|1|5|U|5002
1VWW|1|5|U|5003
1VWW|1|5|C|5004
1VWW|1|5|G|5005
1VWW|1|5|U|5006
1VWW|1|5|A|5007
1VWW|1|5|C|5008
1VWW|1|5|G|5009
1VWW|1|5|U|5010
1VWW|1|5|A|5011
1VWW|1|5|G|5012
1VWW|1|5|C|5013
1VWW|1|5|A|5014
1VWW|1|5|G|5015
1VWW|1|5|A|5016
1VWW|1|5|G|5017
*
1VWW|1|5|C|5032
1VWW|1|5|G|5033
1VWW|1|5|A|5034
1VWW|1|5|U|5035
1VWW|1|5|C|5036
1VWW|1|5|U|5037
1VWW|1|5|A|5038
1VWW|1|5|U|5039
1VWW|1|5|U|5040
1VWW|1|5|G|5041
1VWW|1|5|A|5042
1VWW|1|5|A|5043
1VWW|1|5|A|5044
1VWW|1|5|G|5045
1VWW|1|5|U|5046
1VWW|1|5|C|5047
1VWW|1|5|A|5048
1VWW|1|5|G|5049
1VWW|1|5|C|5050
1VWW|1|5|C|5051
1VWW|1|5|C|5052
1VWW|1|5|U|5053
1VWW|1|5|C|5054
1VWW|1|5|G|5055

Current chains

Chain 5

28S ribosomal RNA

Nearby chains