IL_1VWW_182

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

1VWW|1|5|A|3746, 1VWW|1|5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VWW_182 not in the Motif Atlas

Geometric match to IL_8CRE_090

Geometric discrepancy: 0.1931

The information below is about IL_8CRE_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

1VWW|1|5|U|3704
1VWW|1|5|G|3705
*
1VWW|1|5|U|3745
1VWW|1|5|A|3746
1VWW|1|5|A|3747
1VWW|1|5|A|3748

Current chains

Chain 5

28S ribosomal RNA

Nearby chains