IL_1VX2_025

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUACAGGAC*GGCCCUGUAAUU

Length

22 nucleotides

Bulged bases

1VX2|1|2|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_72055.1

Basepair signature

cWW-L-R-R-R-R-L-cWW-cWW-cWW-cWW-R-bif-L-cWW

Number of instances in this motif group

1

Unit IDs

1VX2|1|2|A|528
1VX2|1|2|A|529
1VX2|1|2|U|530
1VX2|1|2|A|531
1VX2|1|2|C|532
1VX2|1|2|A|533
1VX2|1|2|G|534
1VX2|1|2|G|535
1VX2|1|2|A|536
1VX2|1|2|C|537
*
1VX2|1|2|G|546
1VX2|1|2|G|547
1VX2|1|2|C|548
1VX2|1|2|C|549
1VX2|1|2|C|550
1VX2|1|2|U|551
1VX2|1|2|G|552
1VX2|1|2|U|553
1VX2|1|2|A|554
1VX2|1|2|A|555
1VX2|1|2|U|556
1VX2|1|2|U|557

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Ribosomal protein uS4

Chain e

Ribosomal protein eS30