IL_1VX2_030

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

1VX2|1|2|A|668

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48256.1

Basepair signature

cWW-cWW

Number of instances in this motif group

360

Unit IDs

1VX2|1|2|G|665
1VX2|1|2|U|666
1VX2|1|2|U|667
1VX2|1|2|A|668
1VX2|1|2|A|669
1VX2|1|2|A|670
1VX2|1|2|A|671
*
1VX2|1|2|U|1161
1VX2|1|2|C|1162

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Ribosomal protein uS12

Chain a

Ribosomal protein eS26