IL_1VX2_047

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGGUUC*GUUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44847.1

Basepair signature

cWW-cWW-L-R-L-L-L-cWW

Number of instances in this motif group

2

Unit IDs

1VX2|1|2|G|1041
1VX2|1|2|A|1042
1VX2|1|2|G|1043
1VX2|1|2|G|1044
1VX2|1|2|U|1045
1VX2|1|2|U|1046
1VX2|1|2|C|1047
*
1VX2|1|2|G|1071
1VX2|1|2|U|1072
1VX2|1|2|U|1073
1VX2|1|2|C|1074

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein uS15

Chain O

Ribosomal protein uS11

Chain a

Ribosomal protein eS26