IL_1VX2_053

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

1VX2|1|2|C|1215, 1VX2|1|2|C|1216

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73276.8

Basepair signature

cWW-tHW-cSW-R-cWW

Number of instances in this motif group

29

Unit IDs

1VX2|1|2|A|1214
1VX2|1|2|C|1215
1VX2|1|2|C|1216
1VX2|1|2|A|1217
*
1VX2|1|2|U|1681
1VX2|1|2|C|1682
1VX2|1|2|C|1683
1VX2|1|2|C|1684
1VX2|1|2|U|1685

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 6

P/E tRNA

Chain F

Ribosomal protein uS7

Chain Q

Ribosomal protein uS9

Chain c

Ribosomal protein eS28