IL_1VX2_064

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

1VX2|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41766.9

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

88

Unit IDs

1VX2|1|2|C|1395
1VX2|1|2|A|1396
1VX2|1|2|U|1397
1VX2|1|2|G|1398
1VX2|1|2|C|1399
*
1VX2|1|2|G|1447
1VX2|1|2|A|1448
1VX2|1|2|G|1449
1VX2|1|2|G|1450

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein uS9

Chain R

Ribosomal protein eS17

Chain U

Ribosomal protein uS10

Chain g

Ribosomal protein RACK1