IL_1VX2_066

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUACGCG*CCCCCAA

Length

14 nucleotides

Bulged bases

1VX2|1|2|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_27713.1

Basepair signature

cWW-tHS-cWW-L-R-R-R-L-L-cWW

Number of instances in this motif group

1

Unit IDs

1VX2|1|2|U|1407
1VX2|1|2|U|1408
1VX2|1|2|A|1409
1VX2|1|2|C|1410
1VX2|1|2|G|1411
1VX2|1|2|C|1412
1VX2|1|2|G|1413
*
1VX2|1|2|C|1433
1VX2|1|2|C|1434
1VX2|1|2|C|1435
1VX2|1|2|C|1436
1VX2|1|2|C|1437
1VX2|1|2|A|1438
1VX2|1|2|A|1439

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein uS9

Chain T

Ribosomal protein eS19

Chain U

Ribosomal protein uS10