IL_1VX2_092

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAUGGUU*GAACGUC

Length

16 nucleotides

Bulged bases

1VX2|1|2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|G|108
1VX2|1|2|U|109
1VX2|1|2|U|110
1VX2|1|2|A|111
1VX2|1|2|U|112
1VX2|1|2|G|113
1VX2|1|2|G|114
1VX2|1|2|U|115
1VX2|1|2|U|116
*
1VX2|1|2|G|347
1VX2|1|2|A|348
1VX2|1|2|A|349
1VX2|1|2|C|350
1VX2|1|2|G|351
1VX2|1|2|U|352
1VX2|1|2|C|353

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain I

Ribosomal protein eS8

Chain L

Ribosomal protein uS17