IL_1VX2_095
3D structure
- PDB id
- 1VX2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGGCAAGUCUGGUGCCAG*CGGUAAUUCCAGCU
- Length
- 33 nucleotides
- Bulged bases
- 1VX2|1|2|U|627, 1VX2|1|2|A|628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VX2|1|2|A|599
1VX2|1|2|G|600
1VX2|1|2|G|601
1VX2|1|2|G|602
1VX2|1|2|C|603
1VX2|1|2|A|604
1VX2|1|2|A|605
1VX2|1|2|G|606
1VX2|1|2|U|607
1VX2|1|2|C|608
1VX2|1|2|U|609
1VX2|1|2|G|610
1VX2|1|2|G|611
1VX2|1|2|U|612
1VX2|1|2|G|613
1VX2|1|2|C|614
1VX2|1|2|C|615
1VX2|1|2|A|616
1VX2|1|2|G|617
*
1VX2|1|2|C|624
1VX2|1|2|G|625
1VX2|1|2|G|626
1VX2|1|2|U|627
1VX2|1|2|A|628
1VX2|1|2|A|629
1VX2|1|2|U|630
1VX2|1|2|U|631
1VX2|1|2|C|632
1VX2|1|2|C|633
1VX2|1|2|A|634
1VX2|1|2|G|635
1VX2|1|2|C|636
1VX2|1|2|U|637
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 4
- Messenger RNA
- Chain 5
- Transfer RNA; tRNA
- Chain C
- Ribosomal protein uS5
- Chain D
- Ribosomal protein uS3
- Chain J
- Ribosomal protein uS4
- Chain X
- Ribosomal protein uS12
- Chain e
- Ribosomal protein eS30
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