IL_1VX2_097

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAAAAUUAGAGUGUUCAAAGCAG*CUGGAUACCGCAGC

Length

39 nucleotides

Bulged bases

1VX2|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|G|807
1VX2|1|2|A|808
1VX2|1|2|A|809
1VX2|1|2|A|810
1VX2|1|2|A|811
1VX2|1|2|A|812
1VX2|1|2|A|813
1VX2|1|2|U|814
1VX2|1|2|U|815
1VX2|1|2|A|816
1VX2|1|2|G|817
1VX2|1|2|A|818
1VX2|1|2|G|819
1VX2|1|2|U|820
1VX2|1|2|G|821
1VX2|1|2|U|822
1VX2|1|2|U|823
1VX2|1|2|C|824
1VX2|1|2|A|825
1VX2|1|2|A|826
1VX2|1|2|A|827
1VX2|1|2|G|828
1VX2|1|2|C|829
1VX2|1|2|A|830
1VX2|1|2|G|831
*
1VX2|1|2|C|843
1VX2|1|2|U|844
1VX2|1|2|G|845
1VX2|1|2|G|846
1VX2|1|2|A|847
1VX2|1|2|U|848
1VX2|1|2|A|849
1VX2|1|2|C|850
1VX2|1|2|C|851
1VX2|1|2|G|852
1VX2|1|2|C|853
1VX2|1|2|A|854
1VX2|1|2|G|855
1VX2|1|2|C|856

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eS4

Chain J

Ribosomal protein uS4

Chain L

Ribosomal protein uS17

Chain W

Ribosomal protein uS8

Chain Y

Ribosomal protein eS24