IL_1VX2_098

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCGCUAG*CUUGGACCGGC

Length

19 nucleotides

Bulged bases

1VX2|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|G|949
1VX2|1|2|C|950
1VX2|1|2|C|951
1VX2|1|2|G|952
1VX2|1|2|C|953
1VX2|1|2|U|954
1VX2|1|2|A|955
1VX2|1|2|G|956
*
1VX2|1|2|C|967
1VX2|1|2|U|968
1VX2|1|2|U|969
1VX2|1|2|G|970
1VX2|1|2|G|971
1VX2|1|2|A|972
1VX2|1|2|C|973
1VX2|1|2|C|974
1VX2|1|2|G|975
1VX2|1|2|G|976
1VX2|1|2|C|977

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein eS1

Chain O

Ribosomal protein uS11