IL_1VX2_099

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAGACG*CGUCGUAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|1047
1VX2|1|2|G|1048
1VX2|1|2|A|1049
1VX2|1|2|A|1050
1VX2|1|2|G|1051
1VX2|1|2|A|1052
1VX2|1|2|C|1053
1VX2|1|2|G|1054
*
1VX2|1|2|C|1064
1VX2|1|2|G|1065
1VX2|1|2|U|1066
1VX2|1|2|C|1067
1VX2|1|2|G|1068
1VX2|1|2|U|1069
1VX2|1|2|A|1070
1VX2|1|2|G|1071

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Ribosomal protein uS11

Chain a

Ribosomal protein eS26