IL_1VX2_100

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUAUGGUU*AGCUGAAAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|G|1168
1VX2|1|2|G|1169
1VX2|1|2|A|1170
1VX2|1|2|G|1171
1VX2|1|2|U|1172
1VX2|1|2|A|1173
1VX2|1|2|U|1174
1VX2|1|2|G|1175
1VX2|1|2|G|1176
1VX2|1|2|U|1177
1VX2|1|2|U|1178
*
1VX2|1|2|A|1183
1VX2|1|2|G|1184
1VX2|1|2|C|1185
1VX2|1|2|U|1186
1VX2|1|2|G|1187
1VX2|1|2|A|1188
1VX2|1|2|A|1189
1VX2|1|2|A|1190
1VX2|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Ribosomal protein uS12