IL_1VX2_101
3D structure
- PDB id
- 1VX2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUAAUUUGACUCAACACGGGAAACCUCAC*GGCUG
- Length
- 35 nucleotides
- Bulged bases
- 1VX2|1|2|A|1253, 1VX2|1|2|C|1254, 1VX2|1|2|G|1256, 1VX2|1|2|A|1258, 1VX2|1|2|A|1260, 1VX2|1|2|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VX2|1|2|C|1237
1VX2|1|2|U|1238
1VX2|1|2|U|1239
1VX2|1|2|A|1240
1VX2|1|2|A|1241
1VX2|1|2|U|1242
1VX2|1|2|U|1243
1VX2|1|2|U|1244
1VX2|1|2|G|1245
1VX2|1|2|A|1246
1VX2|1|2|C|1247
1VX2|1|2|U|1248
1VX2|1|2|C|1249
1VX2|1|2|A|1250
1VX2|1|2|A|1251
1VX2|1|2|C|1252
1VX2|1|2|A|1253
1VX2|1|2|C|1254
1VX2|1|2|G|1255
1VX2|1|2|G|1256
1VX2|1|2|G|1257
1VX2|1|2|A|1258
1VX2|1|2|A|1259
1VX2|1|2|A|1260
1VX2|1|2|C|1261
1VX2|1|2|C|1262
1VX2|1|2|U|1263
1VX2|1|2|C|1264
1VX2|1|2|A|1265
1VX2|1|2|C|1266
*
1VX2|1|2|G|1516
1VX2|1|2|G|1517
1VX2|1|2|C|1518
1VX2|1|2|U|1519
1VX2|1|2|G|1520
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- Transfer RNA; tRNA
- Chain P
- Ribosomal protein uS19
- Chain Q
- Ribosomal protein uS9
- Chain S
- Ribosomal protein uS13
- Chain U
- Ribosomal protein uS10
- Chain d
- Ribosomal protein uS14
- Chain f
- Ribosomal protein eS31
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