IL_1VX2_101

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAAUUUGACUCAACACGGGAAACCUCAC*GGCUG

Length

35 nucleotides

Bulged bases

1VX2|1|2|A|1253, 1VX2|1|2|C|1254, 1VX2|1|2|G|1256, 1VX2|1|2|A|1258, 1VX2|1|2|A|1260, 1VX2|1|2|U|1519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|1237
1VX2|1|2|U|1238
1VX2|1|2|U|1239
1VX2|1|2|A|1240
1VX2|1|2|A|1241
1VX2|1|2|U|1242
1VX2|1|2|U|1243
1VX2|1|2|U|1244
1VX2|1|2|G|1245
1VX2|1|2|A|1246
1VX2|1|2|C|1247
1VX2|1|2|U|1248
1VX2|1|2|C|1249
1VX2|1|2|A|1250
1VX2|1|2|A|1251
1VX2|1|2|C|1252
1VX2|1|2|A|1253
1VX2|1|2|C|1254
1VX2|1|2|G|1255
1VX2|1|2|G|1256
1VX2|1|2|G|1257
1VX2|1|2|A|1258
1VX2|1|2|A|1259
1VX2|1|2|A|1260
1VX2|1|2|C|1261
1VX2|1|2|C|1262
1VX2|1|2|U|1263
1VX2|1|2|C|1264
1VX2|1|2|A|1265
1VX2|1|2|C|1266
*
1VX2|1|2|G|1516
1VX2|1|2|G|1517
1VX2|1|2|C|1518
1VX2|1|2|U|1519
1VX2|1|2|G|1520

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

A/P tRNA

Chain 6

P/E tRNA

Chain P

Ribosomal protein uS19

Chain Q

Ribosomal protein uS9

Chain S

Ribosomal protein uS13

Chain U

Ribosomal protein uS10

Chain d

Ribosomal protein uS14

Chain f

Ribosomal protein eS31