IL_1VX2_103

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGUCUGGUUAAUUCCGAUAA

Length

22 nucleotides

Bulged bases

1VX2|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|U|1350
1VX2|1|2|G|1351
*
1VX2|1|2|U|1360
1VX2|1|2|G|1361
1VX2|1|2|U|1362
1VX2|1|2|C|1363
1VX2|1|2|U|1364
1VX2|1|2|G|1365
1VX2|1|2|G|1366
1VX2|1|2|U|1367
1VX2|1|2|U|1368
1VX2|1|2|A|1369
1VX2|1|2|A|1370
1VX2|1|2|U|1371
1VX2|1|2|U|1372
1VX2|1|2|C|1373
1VX2|1|2|C|1374
1VX2|1|2|G|1375
1VX2|1|2|A|1376
1VX2|1|2|U|1377
1VX2|1|2|A|1378
1VX2|1|2|A|1379

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uS2

Chain C

Ribosomal protein uS5

Chain R

Ribosomal protein eS17

Chain a

Ribosomal protein eS26