IL_1VX2_107

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCGGAU*AGAAGACG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX2|1|2|C|1739
1VX2|1|2|C|1740
1VX2|1|2|U|1741
1VX2|1|2|C|1742
1VX2|1|2|G|1743
1VX2|1|2|G|1744
1VX2|1|2|A|1745
1VX2|1|2|U|1746
*
1VX2|1|2|A|1788
1VX2|1|2|G|1789
1VX2|1|2|A|1790
1VX2|1|2|A|1791
1VX2|1|2|G|1792
1VX2|1|2|A|1793
1VX2|1|2|C|1794
1VX2|1|2|G|1795

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Ribosomal protein eS6

Chain I

Ribosomal protein eS8