IL_1VX3_018
3D structure
- PDB id
- 1VX3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 1VX3|1|5|G|409, 1VX3|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VX3_018 not in the Motif Atlas
- Geometric match to IL_8CRE_015
- Geometric discrepancy: 0.2088
- The information below is about IL_8CRE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
1VX3|1|5|G|387
1VX3|1|5|A|388
1VX3|1|5|A|389
1VX3|1|5|C|390
*
1VX3|1|5|G|401
1VX3|1|5|A|402
1VX3|1|5|G|403
1VX3|1|5|U|404
1VX3|1|5|U|405
1VX3|1|5|C|406
1VX3|1|5|A|407
1VX3|1|5|A|408
1VX3|1|5|G|409
1VX3|1|5|A|410
1VX3|1|5|G|411
1VX3|1|5|G|412
1VX3|1|5|G|413
1VX3|1|5|C|414
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: