IL_1VX3_063

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_063 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.2093

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

1VX3|1|5|C|1551
1VX3|1|5|G|1552
1VX3|1|5|A|1553
1VX3|1|5|A|1554
1VX3|1|5|G|1555
*
1VX3|1|5|U|1572
1VX3|1|5|G|1573
1VX3|1|5|G|1574
1VX3|1|5|A|1575
1VX3|1|5|G|1576

Current chains

Chain 5

28S ribosomal RNA

Nearby chains