Motif IL_50730.2 Version IL_50730.2 of this group appears in releases 3.95 to 3.97

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10	1-10	2-9	2-10	3-8	4-7	5-6
1	IL_8P9A_258	8P9A	0.2730	0	Triple sheared (H)	AR	LSU rRNA	U	834	G	835	A	836	A	837	G	838	*	U	855	G	856	G	857	A	858	G	859	cWW	tSH		tHS	tHS	cWW
2	IL_8CRE_033	8CRE	0.2374	0	Triple sheared (H)	1	LSU rRNA	U	830	G	831	A	832	A	833	G	834	*	U	851	G	852	G	853	A	854	G	855	cWW	ntSH		tHS	tHS	cWW
3	IL_5J7L_263	5J7L	0.2414	0	Triple sheared	DA	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH		tHS	tHS	cWW
4	IL_9DFE_019	9DFE	0.2287	0	Triple sheared (H)	1A	LSU rRNA	U	703	G	704	A	705	A	706	G	707	*	U	724	G	725	G	726	A	727	G	728	cWW	tSH		tHS	tHS	cWW
5	IL_4V9F_027	4V9F	0.2301	0	Triple sheared	0	LSU rRNA	U	794	G	795	A	796	A	797	G	798	*	U	815	G	816	G	817	A	818	A	819	cWW	ntSH		tHS	tHS	cWW
6	IL_4WF9_024	4WF9	0.2268	0	Triple sheared	X	LSU rRNA	U	748	G	749	A	750	A	751	G	752	*	U	769	G	770	G	771	A	772	G	773	cWW			tHS	tHS	cWW
7	IL_5J7L_310	5J7L	0.2187	0	Triple sheared	DA	LSU rRNA	U	1720	G	1721	A	1722	G	1723	G	1724	*	U	1736	G	1737	G	1738	A	1739	G	1740	cWW	tSH		tHS	ntHS	cWW
8	IL_8P9A_295	8P9A	0.1466	0	Triple sheared (H)	AR	LSU rRNA	U	1645	G	1646	A	1647	A	1648	U	1649	*	A	1806	G	1807	G	1808	A	1809	A	1810	cWW	tSH		ntHS	tHS	cWW
9	IL_8CRE_072	8CRE	0.0000	0	Triple sheared (H)	1	LSU rRNA	U	1641	G	1642	A	1643	A	1644	U	1645	*	A	1802	G	1803	G	1804	A	1805	A	1806	cWW	tSH		ntHS	tHS	cWW
10	IL_3IWN_002	3IWN	0.2426	0	Triple sheared	A	C-di-GMP riboswitch	C	12	A	13	A	14	A	15	C	16	*	G	31	G	32	A	33	C	34	G	35	cWW	ntSH			tHS	cWW
11	IL_3MXH_002	3MXH	0.2716	0	Triple sheared	R	c-di-GMP riboswitch	C	22	A	23	A	24	A	25	C	26	*	G	41	G	42	A	43	C	44	G	45	cWW	ntSH			tHS	cWW
12	IL_4YAZ_006	4YAZ	0.2604	0	Triple sheared	R	Cyclic di-GMP-I riboswitch	U	16	A	17	A	18	A	19	C	20	*	G	35	G	36	G	37	C	38	G	39	cWW	ntSH			tHS	cWW
13	IL_3IGI_002	3IGI	0.3309	0	Triple sheared	A	Group IIC intron	C	70	U	71	A	72	A	73	C	74	*	G	113	G	114	A	115	C	116	G	117	cWW	ntSH			tHS	cWW
14	IL_8P9A_463	8P9A	0.3528	0	Triple sheared (H)	sR	SSU rRNA	A	1719	G	1720	A	1721	A	1722	U	1723	*	A	1678	G	1679	G	1680	A	1681	U	1682	cWW			tHS	tHS	cWW
15	IL_8CRE_476	8CRE	0.3335	0	Triple sheared (H)	CM	SSU rRNA	A	1706	G	1707	A	1708	A	1709	G	1710	*	C	1665	G	1666	G	1667	A	1668	U	1669	cWW		ntSH	ntHS	tHS	cWW
16	IL_2A64_005	2A64	0.3263	0	Triple sheared	A	ribonuclease P RNA	C	284	G	285	A	286	A	287	G	288	*	C	297	G	298	G	299	A	300	G	301	cWW	tSH		ntHS	tHS	cWW
17	IL_9DFE_075	9DFE	0.2428	0	Triple sheared (H)	1A	LSU rRNA	C	1882	G	1883	A	1884	A	1885	C	1886	*	G	1856	G	1857	G	1858	A	1859	G	1860	cWW	tSH		tHS	tHS	cWW
18	IL_2A64_006	2A64	0.2983	0	Triple sheared	A	ribonuclease P RNA	C	378	G	379	A	380	A	381	G	382	*	C	347	G	348	G	349	A	350	G	351	cWW			tHS	tHS	cWW
19	IL_7A0S_070	7A0S	0.3926	0	Triple sheared	X	LSU rRNA	C	1865	G	1866	A	1867	A	1868	A	1869	*	U	1848	G	1849	G	1850	A	1851	G	1852	cWW	ntSH			tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAAG*UGGAG	5
UGAAU*AGGAA	2
CAAAC*GGACG	2
CGAAG*CGGAG	2
UGAAG*UGGAA	1
UGAGG*UGGAG	1
UAAAC*GGGCG	1
CUAAC*GGACG	1
AGAAU*AGGAU	1
AGAAG*CGGAU	1
CGAAC*GGGAG	1
CGAAA*UGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*GGA	14
AAA*GAC	2
GAG*GGA	1
AAA*GGC	1
UAA*GAC	1

Release history

Release	3.95	3.96	3.97
Date	2025-03-26	2025-04-23	2025-05-21
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple sheared (11)
Triple sheared (H) (8)
Basepair signature: cWW-tSH-tHS-tHS-cWW
Heat map statistics: Min 0.07 | Avg 0.29 | Max 0.57

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.2352 s