IL_1VX3_095
3D structure
- PDB id
- 1VX3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 1VX3|1|5|A|2512, 1VX3|1|5|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VX3_095 not in the Motif Atlas
- Geometric match to IL_8CRE_067
- Geometric discrepancy: 0.2772
- The information below is about IL_8CRE_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
1VX3|1|5|C|2446
1VX3|1|5|U|2447
1VX3|1|5|G|2448
1VX3|1|5|A|2449
1VX3|1|5|G|2450
*
1VX3|1|5|C|2509
1VX3|1|5|G|2510
1VX3|1|5|A|2511
1VX3|1|5|A|2512
1VX3|1|5|A|2513
1VX3|1|5|G|2514
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: