IL_1VX3_142

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

1VX3|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_142 not in the Motif Atlas

Geometric match to IL_8P9A_342

Geometric discrepancy: 0.2124

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

1VX3|1|5|C|4582
1VX3|1|5|C|4583
1VX3|1|5|A|4584
1VX3|1|5|U|4585
*
1VX3|1|5|A|4717
1VX3|1|5|G|4718
1VX3|1|5|G|4719
1VX3|1|5|C|4720
1VX3|1|5|G|4721

Current chains

Chain 5

28S ribosomal RNA

Nearby chains