IL_1VX3_149

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

1VX3|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_149 not in the Motif Atlas

Geometric match to IL_7A0S_033

Geometric discrepancy: 0.2518

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

1VX3|1|5|A|4681
1VX3|1|5|U|4682
1VX3|1|5|U|4683
1VX3|1|5|A|4684
1VX3|1|5|U|4685
*
1VX3|1|5|A|4705
1VX3|1|5|G|4706
1VX3|1|5|A|4707
1VX3|1|5|A|4708
1VX3|1|5|U|4709

Current chains

Chain 5

28S ribosomal RNA

Nearby chains