IL_1VX3_153

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUCC*GUCC

Length

9 nucleotides

Bulged bases

1VX3|1|5|C|4771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_153 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.3939

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

1VX3|1|5|G|4768
1VX3|1|5|G|4769
1VX3|1|5|U|4770
1VX3|1|5|C|4771
1VX3|1|5|C|4772
*
1VX3|1|5|G|4863
1VX3|1|5|U|4864
1VX3|1|5|C|4865
1VX3|1|5|C|4866

Current chains

Chain 5

28S ribosomal RNA

Nearby chains