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Motif IL_71194.3 Version IL_71194.3 of this group appears in releases 4.7 to 4.7

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4break 5 6 7 81-71-82-62-73-64-5
1 IL_7LYF_0017LYF0.31321Isolated cWH basepair with non-canonical cWWADengue virus SLAA90G91U93C94*G39U40C41U42cWWncHWncwWcWW
2 IL_8GLP_3198GLP0.37450L5 LSU rRNAPSU4972U4973C4974G4975*C4983C4984U4985G4986cWWcwWcWwcWW
3 IL_8X5V_0018X5V0.29570Tandem non-canonical cWW pairsBRNA (110-mer)U28U29C30C31*G40U41U42G43cWWcwWcWWcWW
4 IL_4K27_0024K270.40560Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC45C46U47G48*C8C9U10G11cWWcWWcWWcWW
5 IL_4K27_0034K270.37390Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC41C42U43G44*C12C13U14G15cWWcWWcWWcWW
6 IL_4XW0_0024XW00.29870Tandem non-canonical cWW pairsA+BRNA (10-mer)C2C3U4LCG5*C2C3U4LCG5cWWcWWcWWcWW
7 IL_9H3G_2409H3G0.22040h1 SSU rRNAU1666C1667C1668G1669*C1738U1739U1740A1741cWWcWWcWWcWW
8 IL_8P9A_3568P9A0.18320Tandem non-canonical cWW pairsAR LSU rRNAU3300U3301U3302G3303*C3311U3312U3313A3314cWWcwWcWwcWW
9 IL_9AXU_1179AXU0.28450Tandem non-canonical cWW pairs (H)2 LSU rRNAC3412U3413U3414U3415*A3401U3402U3403G3404cWWcWwcWwcWW
10 IL_9H3G_1409H3G0.30390A LSU rRNAC3298OMU3299U3300A3301*U3287U3288U3289OMG3290ncWWcWWcWwcWwcWW
11 IL_8OI5_1268OI50.27140Tandem non-canonical cWW pairs (H)1 LSU rRNAC3276U3277U3278A3279*U3265U3266U3267G3268cWWcWwcWwcWW
12 IL_5EW4_0025EW40.29020Tandem non-canonical cWW pairsB+ARNA (22-mer)C8C9C10G11*C14C15C16G17cWWncBWncBWcWW
13 IL_8FER_0018FER0.29180Tandem non-canonical cWW pairsAAA+BBBRNA 16mer with two continuous s(2)UG7SUR8SUR9C10*G7SUR8SUR9C10cWWcWwcWwcWW
14 IL_7A0S_0407A0S0.20630Tandem non-canonical cWW pairsX LSU rRNAA1175U1176U1177C1178*G1196U1197C1198U1199cWWcWWncWwcWW
15 IL_3TZR_0033TZR0.22150Tandem non-canonical cWW pairsA+BRNA (20-mer) + RNA (16-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
16 IL_2PN3_0042PN30.23750Tandem non-canonical cWW pairsA+BRNA (24-mer) + RNA (20-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
17 IL_8P9A_4118P9A0.29650Tandem non-canonical cWW pairssR SSU rRNAC726U727U728G729*C709U710U711G712ncWWcwWcWwcWW
18 IL_4EYA_0034EYA0.20550Tandem non-canonical cWW pairsf+eRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
19 IL_8CRE_4758CRE0.13580Tandem non-canonical cWW pairsCM SSU rRNAG1710C1711U1712G1713*C1662U1663C1664C1665cWWncWwcWwcWW
20 IL_9H3G_2429H3G0.11500h1 SSU rRNAG1677U1678U1679C1680*G1727U1728C1729C1730cWWcWWcWwcWW
21 IL_8ID2_0018ID20.00000Tandem non-canonical cWW pairsCRNA (24-mer)A5C6U7G8*C17U18U19U20cWWncWWcWWcWwcWW
22 IL_4UYK_0034UYK0.14120Tandem non-canonical cWW pairsRSRP RNAG81U82U83C84*G117U118U119C120cWWcwWcWwcWW
23 IL_8OI5_1258OI50.16030Tandem non-canonical cWW pairs (H)1 LSU rRNAU3214U3215U3216G3217*C3200U3201U3202A3203cWWcwWcWwcWW
24 IL_8OI5_0578OI50.13270Tandem non-canonical cWW pairs (H)1 LSU rRNAA1339U1340U1341G1342*C1354U1355U1356U1357cWWcwWcWwcWW
25 IL_8P9A_3558P9A0.12870Tandem non-canonical cWW pairsAR LSU rRNAC3235U3236U3237G3238*C3249U3250U3251G3252cWWcwWcWwcWW
26 IL_6MWN_0056MWN0.13450Tandem non-canonical cWW pairsB IRESA643U644U645G646*C661U662U663U664cWWcwWcWwcWW
27 IL_3R2D_0023R2D0.13010Tandem non-canonical cWW pairsS+RRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
28 IL_9H3G_0479H3G0.25850A LSU rRNAU1051U1052C1053PSU1054*A1017U1018U1019A1020cWWcwWncWScWW
29 IL_8OI5_0448OI50.242301 LSU rRNAU1037U1038C1039U1040*A1002U1003U1004A1005cWWcwWncWSncWW
30 IL_8P9A_2698P9A0.24370Tandem non-canonical cWW pairsAR LSU rRNAU1041U1042C1043U1044*A1006U1007U1008A1009cWWcwWcWW
31 IL_8P9A_4628P9A0.22610Tandem non-canonical cWW pairssR SSU rRNAC1675U1676C1677A1678*U1723U1724U1725G1726cWWcwWcWW
32 IL_8UIW_0028UIW0.22130Tandem non-canonical cWW pairsNazaaromatic riboswitch aptamer (yjdF RNA)G112U113C114G115*C100U101U102C103cWWcwWcWW
33 IL_8GLP_2948GLP0.29740Tandem non-canonical cWW pairs (H)L5 LSU rRNAPSU1781PSU1782C1783U1784*A1746U1747U1748A1749cWWcwWcWW
34 IL_8HNT_0018HNT0.24260Tandem non-canonical cWW pairsBsgRNAC32U33C34C35*G54U55U56G57cWWcwWncWScWW
35 IL_6JDV_0016JDV0.22210Tandem non-canonical cWW pairsBCRISPR RNA direct repeat elementC32U33C34C35*G66U67U68G69cWWcwWncWScWW
36 IL_8GLP_2208GLP0.24380S2 SSU rRNAU581U582A583A584*U566C567C568A569cWWncWWncWScWW
37 IL_5C5W_0015C5W0.21850Tandem non-canonical cWW pairsARNA (19-mer)C15||||5_556U16||||5_556A17||||5_556G18||||5_556*C2C3U4G5cWWcwWcWWcWW
38 IL_9H3G_1629H3G0.23620h1 SSU rRNAPSU304U305U306C307*G110U111U112A113cWWcwWcWwcWW
39 IL_8P9A_3808P9A0.26150Tandem non-canonical cWW pairssR SSU rRNAU302U303U304C305*G109U110U111A112cWWcwWcWwcWW
40 IL_8CRE_3978CRE0.25320Tandem non-canonical cWW pairsCM SSU rRNAU300U301U302C303*G109U110U111A112cWWcwWcWwcWW
41 IL_8GLP_3398GLP0.50191S2 SSU rRNAC1750C1751C1752C1753*G1780A1781G1782G1784cWWncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG4
CCUG*CCUG2
UUUG*CUUA2
CUUC*GUCG2
AUUG*CUUU2
UUCU*AUUA2
CUCC*GUUG2
UUUC*GUUA2
AGUUC*GUCU1
(PSU)UCG*CCUG1
UUCC*GUUG1
CCU(LCG)*CCU(LCG)1
UCCG*CUUA1
CUUU*AUUG1
C(OMU)UA*UUU(OMG)1
CUUA*UUUG1
CCCG*CCCG1
G(SUR)(SUR)C*G(SUR)(SUR)C1
AUUC*GUCU1
GCUG*CUCC1
GUUC*GUCC1
ACUG*CUUU1
GUUC*GUUC1
UUC(PSU)*AUUA1
CUCA*UUUG1
GUCG*CUUC1
(PSU)(PSU)CU*AUUA1
UUAA*UCCA1
CUAG*CCUG1
(PSU)UUC*GUUA1
CCCC*GAGCG1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU14
UC*UU8
UU*UC4
CU*CU3
GUU*UC1
UC*CU1
CC*UU1
(OMU)U*UU1
CC*CC1
(SUR)(SUR)*(SUR)(SUR)1
CU*UC1
CU*UU1
(PSU)C*UU1
UA*CC1
UA*CU1
CC*AGC1

Release history

Release4.7
Date2026-02-25
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (26)
  • (9)
  • Tandem non-canonical cWW pairs (H) (5)
  • Isolated cWH basepair with non-canonical cWW (1)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.32 | Max 0.73
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