IL_1VX3_164

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAGUAC*GGAAUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_164 not in the Motif Atlas

Geometric match to IL_7A0S_007

Geometric discrepancy: 0.1964

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1VX3|1|7|G|71
1VX3|1|7|U|72
1VX3|1|7|U|73
1VX3|1|7|A|74
1VX3|1|7|G|75
1VX3|1|7|U|76
1VX3|1|7|A|77
1VX3|1|7|C|78
*
1VX3|1|7|G|98
1VX3|1|7|G|99
1VX3|1|7|A|100
1VX3|1|7|A|101
1VX3|1|7|U|102
1VX3|1|7|A|103
1VX3|1|7|C|104

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA