IL_1VX6_005
3D structure
- PDB id
- 1VX6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUAAU*AAUUGUC
- Length
- 14 nucleotides
- Bulged bases
- 1VX6|1|A|U|120, 1VX6|1|A|U|121, 1VX6|1|A|U|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84276.1
- Basepair signature
- cWW-L-tHS-cWW-R-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
1VX6|1|A|G|118
1VX6|1|A|G|119
1VX6|1|A|U|120
1VX6|1|A|U|121
1VX6|1|A|A|122
1VX6|1|A|A|123
1VX6|1|A|U|124
*
1VX6|1|A|A|153
1VX6|1|A|A|154
1VX6|1|A|U|155
1VX6|1|A|U|156
1VX6|1|A|G|157
1VX6|1|A|U|158
1VX6|1|A|C|159
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: