IL_1VX6_012

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUUGA*UCUUUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77382.1

Basepair signature

cWW-L-R-cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1VX6|1|A|A|186
1VX6|1|A|U|187
1VX6|1|A|U|188
1VX6|1|A|U|189
1VX6|1|A|G|190
1VX6|1|A|A|191
*
1VX6|1|A|U|240
1VX6|1|A|C|241
1VX6|1|A|U|242
1VX6|1|A|U|243
1VX6|1|A|U|244
1VX6|1|A|U|245

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA