IL_1VX6_030

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAUA*UUUUAC

Length

11 nucleotides

Bulged bases

1VX6|1|A|U|779, 1VX6|1|A|U|792

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX6|1|A|G|758
1VX6|1|A|U|759
1VX6|1|A|A|760
1VX6|1|A|U|761
1VX6|1|A|A|762
*
1VX6|1|A|U|777
1VX6|1|A|U|778
1VX6|1|A|U|779
1VX6|1|A|U|792
1VX6|1|A|A|793
1VX6|1|A|C|794

Current chains

Chain A

28S ribosomal RNA

Nearby chains