IL_1VX6_031

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUUUG*CUUUGCAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58695.1

Basepair signature

cWW-tSH-L-R-R-R-L-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1VX6|1|A|A|827
1VX6|1|A|G|828
1VX6|1|A|A|829
1VX6|1|A|U|830
1VX6|1|A|U|831
1VX6|1|A|U|832
1VX6|1|A|G|833
*
1VX6|1|A|C|861
1VX6|1|A|U|862
1VX6|1|A|U|863
1VX6|1|A|U|864
1VX6|1|A|G|865
1VX6|1|A|C|866
1VX6|1|A|A|867
1VX6|1|A|U|868

Current chains

Chain A

28S ribosomal RNA

Nearby chains