IL_1VX6_035

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGAG*CUAUUAGC

Length

13 nucleotides

Bulged bases

1VX6|1|A|A|1052, 1VX6|1|A|G|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53635.6

Basepair signature

cWW-R-tHW-tHW-tWW-cWW

Number of instances in this motif group

9

Unit IDs

1VX6|1|A|G|924
1VX6|1|A|A|925
1VX6|1|A|G|926
1VX6|1|A|A|927
1VX6|1|A|G|928
*
1VX6|1|A|C|1050
1VX6|1|A|U|1051
1VX6|1|A|A|1052
1VX6|1|A|U|1053
1VX6|1|A|U|1054
1VX6|1|A|A|1055
1VX6|1|A|G|1056
1VX6|1|A|C|1057

Current chains

Chain A

28S ribosomal RNA

Nearby chains