IL_1VX6_043

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUUAAUAU*AAAAUA

Length

16 nucleotides

Bulged bases

1VX6|1|A|A|1100, 1VX6|1|A|A|1229, 1VX6|1|A|U|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08588.1

Basepair signature

cWW-L-R-R-L-L-L-L-L-L-cWW

Number of instances in this motif group

1

Unit IDs

1VX6|1|A|U|1095
1VX6|1|A|G|1096
1VX6|1|A|A|1097
1VX6|1|A|U|1098
1VX6|1|A|U|1099
1VX6|1|A|A|1100
1VX6|1|A|A|1101
1VX6|1|A|U|1102
1VX6|1|A|A|1103
1VX6|1|A|U|1104
*
1VX6|1|A|A|1228
1VX6|1|A|A|1229
1VX6|1|A|A|1230
1VX6|1|A|A|1231
1VX6|1|A|U|1232
1VX6|1|A|A|1233

Current chains

Chain A

28S ribosomal RNA

Nearby chains