IL_1VX6_059

3D structure

PDB id

1VX6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit (RNA only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCAUGAG*CUAAAG

Length

14 nucleotides

Bulged bases

1VX6|1|A|U|1319, 1VX6|1|A|G|1320, 1VX6|1|A|A|1444, 1VX6|1|A|A|1446

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_40053.2

Basepair signature

cWW-tWW-L-tWW-tWH-cWW

Number of instances in this motif group

4

Unit IDs

1VX6|1|A|C|1315
1VX6|1|A|U|1316
1VX6|1|A|C|1317
1VX6|1|A|A|1318
1VX6|1|A|U|1319
1VX6|1|A|G|1320
1VX6|1|A|A|1321
1VX6|1|A|G|1322
*
1VX6|1|A|C|1442
1VX6|1|A|U|1443
1VX6|1|A|A|1444
1VX6|1|A|A|1445
1VX6|1|A|A|1446
1VX6|1|A|G|1447

Current chains

Chain A

28S ribosomal RNA

Nearby chains